PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 899797
Common NameARALYDRAFT_899797
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 331aa    MW: 38385.8 Da    PI: 9.4262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
899797genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05245267123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              y+Cp+C+ +F ++  +  H+++H
   899797 245 YTCPKCNGVFDTSQKFAAHMSSH 267
              9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0096245267IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369245272IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSSIPNKFNL HCDDTNNRGF SSKQMNQNSK IVQSMFITSD HTNHGDLFSS SPSLTFFQNS  60
HVSSSSFGFK NSHVKNQMMR RNIISGDNYF PIKNNPHFTR VSFTQSITNR YTAIVPTNTL  120
DIVQYDIQRV KRAMYSKTNI WNPKFFPPNI FDKQCELLNP KPLNVIVPRQ DSAYSQHLDM  180
FSLSSKHNYN QRVPQYGSFL KKILKPTKFF GTSTDYIESE ENEKSNDDQY DGRTHSLPYE  240
KYGPYTCPKC NGVFDTSQKF AAHMSSHYKN ETSEEREHRL RAKNKRKYCK LNHEIHGESQ  300
KSKQEDVVNN GEKNDDKAFQ HLVIVKEELD *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935480.0AB493548.1 Arabidopsis thaliana At2g15740 gene for hypothetical protein, partial cds, clone: RAAt2g15740.
GenBankAC0062480.0AC006248.4 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885976.10.0zinc finger family protein
TrEMBLD7L4F80.0D7L4F8_ARALL; Zinc finger family protein
STRINGscaffold_303767.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.10.0C2H2-like zinc finger protein